The following two shots are taken in Namesti Miru (Peace Square) where the movie Illusionist was shot.
The riverfront
The northern part (around Wenceslav Square, Central Station, Masaryk Station and Petrske Square)
The central part (From Dancing House to Charles Square and up towards Vinohrady)
The southern part (across Charles University campus/hospital, around Emmaus Monastery, down to Vysehrad station, and then up to Karlov with a few shots of the Prague highrises.)